Table of Contents

• Preface

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• Introduction
  • 1 The desktop beamline
    • 1.1 Overview
    • 1.2 Motors
    • 1.3 Principles of Operation
    • 1.4 Remote Control
      • "S"-Version
      • "M"-Version
      • "XL"-Version
  • 2 General Remarks About Program mar345dtb
  • 3 General Remarks About Program martb
  • 4 Computer Requirements

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• Graphical User Interface
  • 1 Basic Concepts
  • 2 Environment
  • 3 Command Line Options
  • 4 User Interface
    • 1 "Main" Window
      • 1.1 Menu Bar
        • 1.1.1 File Menu
        • 1.1.2 Edit Menu
        • 1.1.3 Align Menu
        • 1.1.4 Image Menu
        • 1.1.5 Video Menu
        • 1.1.6 CSC Menu
        • 1.1.7 Help Menu
      • 1.2 Pages
        • 1.2.1 Image
        • 1.2.2 Edit
        • 1.2.3 Align
        • 1.2.4 Motors
        • 1.2.5 Initialize
        • 1.2.6 Misc.
          • 1.2.6.1 Single Scan
          • 1.2.6.2 Shutter
          • 1.2.6.3 Remote Control
        • 1.2.7 Log
        • 1.2.8 Crystal
        • 1.2.9 CSC
      • 1.3 Other Windows
        • 1.3.1 "Progress" Window
        • 1.3.2 "Image Header Info" Window
        • 1.3.3 "Administrator" Window
        • 1.3.4 "Hardware" Window
    • 2 "Status" Window
      • 2.1 Menu Bar
        • 2.1.1 File Menu
        • 2.1.2 Help Menu
      • 2.2 Status Buttons

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• Image Display
  • 1 Introduction
  • 2 Image Menu
  • 3 Toolbox
  • 4 Image Area
    • 2 Mouse Button Functions
    • 3 Information Areas
  • 5 "File" Window
  • 6 "Colors" Window
  • 7 3-D Plot
  • 8 "Cross-section" Window

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• Alignment
  • 1 Introduction
  • 2 Work Areas
    • 2.1 Align Menu
      • 2.1.1 Load beam data
      • 2.1.2 Drive to latest maximum
    • 2.2 Status Area
    • 2.3 Input Parameter Area
    • 2.4 Plot Area
  • 3 Alignment Tasks
    • 3.1 Find Beam
    • 3.2 Optimize Beam
    • 3.3 Profile Beam
    • 3.4 Shape Beam
    • 3.5 Adjust ADC
    • 3.6 Manual Operations

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• Edit
  • 1 Introduction
  • 2 Edit Menu
    • 2.1 Description
    • 2.2 Load Parameters
    • 2.3 Save Parameters
    • 2.4 Copy Parameters
  • 3 Selecting Data Sets
  • 4 Directories, Names and Formats
  • 5 Exposure Settings
  • 6 Goniometer Settings
  • 7 Collimator and Beam Settings
  • 8 Options
  • 9 Using Shell Commands
  • 10 Sample Changer Settings

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• Crystal
  • 1 Introduction
  • 2 Video Menu
  • 3 Video
  • 4 Motor Positions
  • 5 Crystal Rotation
  • 6 Crystal Translation
  • 7 Crystal Centering
    • 1 Find Crystal
    • 2 Center Crystal (automatic)

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• Easymount
  • 1 Introduction
  • 2 Operation
  • 3 Initialize

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• CSC
  • 1 Introduction
    • 1.1 Principles of Operation
  • 2 CSC Menu
  • 3 CSC Operations
    • 3.1 Change Sample
    • 3.2 Load Sammple
    • 3.3 Unload Sample
    • 3.4 Give Vial
    • 3.5 Take Vial
    • 3.6 Move Sample to Stored xyz
    • 3.7 Shift Corrections
  • 4 Initialize
  • 5 Csc Options
  • 6 Sample Status

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• Crystal Plate Scanner XPS
  • 1 Introduction
    • 1.1 Principle of Operation
    • 1.2 Crystal Plate Setup
  • 2 XPS Menu
  • 3 XPS Translations
  • 4 XPS Plate ID
  • 5 XPS Status
  • 6 Crystallization Plate
  • 7 Data Collection
  • 8 Crystal page
  • 9 TV window

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• marμX
  • 1 Introduction
  • 2 License
  • 3 "Remote Mode" for GeniX Generator
  • 4 Network Setup of GeniX Generator
  • 5 Operations

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• marμS
  • 1 Introduction
  • 2 "Remote Mode"
  • 3 Operations

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• metaljet
  • 1 Introduction
  • 2 Control of Excillum Generator
  • 3 Operations
  • 4 Data Collection Options

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• Input
  • 1 Overview
  • 2 Configuration File
    • 2.1 Keywords
      • 2.1.1 General
      • 2.1.2 Keywords for dtb
      • 2.1.3 Keywords for mar345
    • 2.2 Example
  • 3 Calibration Files
  • 4 Parameter File
    • 4.1 Keywords
    • 4.2 Example
  • 5 Command File
  • 6 Shell Script
  • 7 Images
  • 8 Carousel File
  • 9 License File
  • 10 XPS Data and Definitions

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• REST API
  • 1. Overview
  • 2. Database
  • 3. API
    • 3.1 Introduction
    • 3.2 HTTP requests
    • 3.3 Commands
      • 3.3.1 ping
      • 3.3.2 auth
      • 3.3.3 show
      • 3.3.4 cmd
      • 3.3.5 img
      • 3.3.6 json

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• Output
  • 1 Overview
  • 2 Lock File
  • 3 Message File
  • 4 Log File
  • 5 Spy Files
  • 6 Statistics File
  • 7 Parameter File
  • 8 Status File
  • 9 Beam History File
  • 10 Beam Scan File
  • 11 Beam Profile File
  • 13 Beamplot File
  • 14 mar2thumb: Thumbnail Conversion Script
  • 14 Data Images
  • 15 ASCII Summary File
  • 16 HTML Summary File
  • 17 Automar Sync File
  • 18 Errors File
  • 19 Images used for Crystal Finding
  • 20 Carousel File

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• Appendix
  • A. dtb Firmware Update
    • A.1 Firmware Distribution
      • A.1.1 Application Software (APPL)
      • A.1.2 Operating System (RTOS)
    • A.2 Application Software Update
    • A.2.1 Update Procedure for Firmware Versions ≥ 4.0
    • A.2.2 Update Procedure for Firmware Versions ≤ 3.5
    • A.3 Operating System Update
    • A.4 List Firmware Versions
    • A.5 Update of Disks R2, R3 and R5
  • B. How to Assign Motors to the Buttons of the Local Motor Control